PEARC20 has ended
Welcome to PEARC20!
PEARC20’s theme is “Catch the Wave.” This year’s theme embodies the spirit of the community’s drive to stay on pace and in front of all the new waves in technology, analytics, and a globally connected and diverse workforce. We look forward to this year’s PEARC20 virtual meeting, where we can share scientific discovery and craft the future infrastructure.

The conference will be held in Pacific Time (PT) and the times listed below are in Pacific Time.

The connection information for all PEARC20 workshops, tutorials, plenaries, track presentations, BOFs, Posters, Visualization Showcase, and other affiliated events, are in the PEARC20 virtual conference platform, Brella. If you have issues joining Brella, please email pearcinfo@googlegroups.com.
Tuesday, July 28 • 1:35pm - 2:35pm
Building an Interactive Workbench Environment for Single Cell Genomics Applications

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We discuss the procedure to build an interactive workbench environment for single cell genomic applications with the Open OnDemand (OOD) science gateway. In our approach, an end-user submits a complex single cell RNA sequencing (scRNA) pipeline, checks the status of the job, and visualizes the output results. All of these tasks are accomplished through a web browser, relieving the users from the complexities involved in developing and handling a large-scale workflow. Our approach helped researchers in processing several input data sets of scRNA in the campus HPC cluster. Although the current work is focused on scRNA analysis, the same approach can be extended for any workflow.

Tuesday July 28, 2020 1:35pm - 2:35pm PDT